| unique_clonotypes {clonotypeR} | R Documentation |
Finds all the clonotypes expressed in one or more libraries, and returns a vector where they are listed once. This vector can be used to subset a clonotype_table.
unique_clonotypes(..., data)
... |
One or more character vectors contain clonotype library names |
data |
The name of the clonotype_table where the data is stored. |
Uses the table called “clonotypes” by default.
Character vector of clonotype names. Their order follows the original row name order of the clonotype_table.
Charles Plessy
clonotype_table, common_clonotypes
# Load example data
clonotypes.long <- read_clonotypes(system.file('extdata', 'clonotypes.txt.gz', package = "clonotypeR"))
clonotypes <- clonotype_table(levels(clonotypes.long$lib), data=clonotypes.long)
summary(clonotypes)
# List clonotypes found in library A.
unique_clonotypes("A", data=clonotypes)
# List clonotypes found in library A or B.
unique_clonotypes("A","B", data=clonotypes)