| clonotype_table | Create a table count of clonotypes or other features. |
| codon_ids | Extra data used to calculate ID numbers in Yassai et al.'s nomenclature. |
| common_clonotypes | Reports clonotypes common between libraries. |
| common_clonotypes-method | Reports clonotypes common between libraries. |
| is_unproductive | Determines if clonotype sequences are productive. |
| J_before_FGxG | Extra data used to calculate ID numbers in Yassai et al.'s nomenclature. |
| read_clonotypes | Reads a clonotype_table and returns a data frame. |
| unique_clonotypes | Lists unique clonotypes in libraries. |
| V_after_C | Extra data used to calculate ID numbers in Yassai et al.'s nomenclature. |
| yassai_identifier | TCR clonotype identifier (Yassai et al.). |
| yassai_identifier-method | TCR clonotype identifier (Yassai et al.). |
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